miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|48741012|gb|CO071531.1|CO071531 GAAGAGATATAATTGAAAGAAAAGAAAAACGGTTCTGCTAGAGAAACTTTGGGATGATGTAGTGGCCGGACCTCAACCGG
AACGTGGCCTTGGCCGGCTGAGGAAGATCACAACCACCCCACCCTTGTCCACCAAAGATGAGGCTTCATCAATGGCGATG
CCGACGAGTCCGACGACACCTGGGACACCATCGACGCCGGTGTCGGCTCGTAGGGACAACGTGTGGAGGAGCGTGTTCAA
TCCAGGTAGCAACCTTGCAACCAAAGGTATTGGCGCTGAAGTTTTCGACAAGCCTCAACCTAACTCTCCTACTGTTTATG
ACTGGTTCGTACAGATTTTTTTTTCTTGTTCAGTTATTTGCATGCATGCTTGCTTGGATAATTGGATATATATAAGTGGG
ACTTTGATTTTGCTTTTTGGATGTTTGTGATCCCCATCTGTTTGGTTGCTGAGAAAATTAATCATAGAAGAGTCGTATAT
AAATATTAACCAGGTGTTTTGGAATTTGGATTCTTTTTAATATATAGTACTAAAATGATGAATTTTTCAAAAAGGAAGCC
TCAAAAACTTTCCTGTTTGTGTGTGTTTTTTTTTCTAACGTTTTCTCAGCAACCAAACGGAGGCTCAGAGACAGATCATG
CAGGAAAACTTGGCTCTTTGTTTGGTAGCTGCGTGGAAATAACAGTATGCTGTAATTATTACACTAATCCATTTATAAGC
TTTTATTTTTAATTATTCTTGTTTATTTACTATAAGATGATAAATAACCAAAGATTAATTAGGGTAATTTGCATGGATCT
AATTTCTGGGTGTTAACTAAAATTTA




Most similar to sp|Q05349|12KD_FRAAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q05349|12KD_FRAAN Auxin-repressed 12.5 kDa protein OS=Fragaria
           ananassa PE=2 SV=1
          Length = 111

 Score =  112 bits (280), Expect = 3e-24
 Identities = 54/98 (55%), Positives = 64/98 (65%)
 Frame = +2

Query: 32  VLLEKLWDDVVAGPQPERGLGRLRKITTTPPLSTKDEXXXXXXXXXXXXXXXXXXXXXXR 211
           VLL+KLWDD+VAGPQPERGLG LRK+     L  + E                      R
Sbjct: 2   VLLDKLWDDIVAGPQPERGLGMLRKVPQPLNLKDEGESSKITMPTTPTTPVTPTTPISAR 61

Query: 212 RDNVWRSVFNPGSNLATKGIGAEVFDKPQPNSPTVYDW 325
           +DNVWRSVF+PGSNL++K +G +VFD PQPNSPTVYDW
Sbjct: 62  KDNVWRSVFHPGSNLSSKTMGNQVFDSPQPNSPTVYDW 99